Department of Biotechnology
inStem (Institute for Stem Cell Science and Regenerative Medicine)

SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion.

Publication Type

Research Support, Non-U.S. Gov't

Date of Publication

November 1, 2021

Journal

Nature

Volume/Issue

599/7883

ISSN

1476-4687

The B.1.617.2 (Delta) variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was first identified in the state of Maharashtra in late 2020 and spread throughout India, outcompeting pre-existing lineages including B.1.617.1 (Kappa) and B.1.1.7 (Alpha). In vitro, B.1.617.2 is sixfold less sensitive to serum neutralizing antibodies from recovered individuals, and eightfold less sensitive to vaccine-elicited antibodies, compared with wild-type Wuhan-1 bearing D614G. Serum neutralizing titres against B.1.617.2 were lower in ChAdOx1 vaccinees than in BNT162b2 vaccinees. B.1.617.2 spike pseudotyped viruses exhibited compromised sensitivity to monoclonal antibodies to the receptor-binding domain and the amino-terminal domain. B.1.617.2 demonstrated higher replication efficiency than B.1.1.7 in both airway organoid and human airway epithelial systems, associated with B.1.617.2 spike being in a predominantly cleaved state compared with B.1.1.7 spike. The B.1.617.2 spike protein was able to mediate highly efficient syncytium formation that was less sensitive to inhibition by neutralizing antibody, compared with that of wild-type spike. We also observed that B.1.617.2 had higher replication and spike-mediated entry than B.1.617.1, potentially explaining the B.1.617.2 dominance. In an analysis of more than 130 SARS-CoV-2-infected health care workers across three centres in India during a period of mixed lineage circulation, we observed reduced ChAdOx1 vaccine effectiveness against B.1.617.2 relative to non-B.1.617.2, with the caveat of possible residual confounding. Compromised vaccine efficacy against the highly fit and immune-evasive B.1.617.2 Delta variant warrants continued infection control measures in the post-vaccination era.

Alternate Journal

Nature

PubMed ID

34488225

PubMed Central ID

PMC8566220

Authors

Petra Mlcochova
Steven A Kemp
Mahesh Shanker Dhar
Guido Papa
Bo Meng
Isabella A T M Ferreira
Rawlings Datir
Dami A Collier
Anna Albecka
Sujeet Singh
Rajesh Pandey
Jonathan Brown
Jie Zhou
Niluka Goonawardane
Swapnil Mishra
Charles Whittaker
Thomas Mellan
Robin Marwal
Meena Datta
Shantanu Sengupta
Kalaiarasan Ponnusamy
Venkatraman Srinivasan Radhakrishnan
Adam Abdullahi
Oscar Charles
Partha Chattopadhyay
Priti Devi
Daniela Caputo
Tom Peacock
Chand Wattal
Neeraj Goel
Ambrish Satwik
Raju Vaishya
Meenakshi Agarwal
Antranik Mavousian
Joo Hyeon Lee
Jessica Bassi
Chiara Silacci-Fegni
Christian Saliba
Dora Pinto
Takashi Irie
Isao Yoshida
William L Hamilton
Kei Sato
Samir Bhatt
Seth Flaxman
Leo C James
Davide Corti
Luca Piccoli
Wendy S Barclay
Partha Rakshit
Anurag Agrawal
Ravindra K Gupta

Keywords

Spike Glycoprotein, Coronavirus
SARS-CoV-2
India
Antibodies, Neutralizing
Immune Evasion
Female
COVID-19 Vaccines
Male
Cell Fusion
Humans
Health Personnel
Cell Line
Kinetics
Virus Replication
Vaccination