Department of Biotechnology
inStem (Institute for Stem Cell Science and Regenerative Medicine)

Rational Design of Protein-Specific Folding Modifiers.

Publication Type

Research Support, Non-U.S. Gov't

Date of Publication

November 10, 2021

Journal

Journal of the American Chemical Society

Volume/Issue

143/44

ISSN

1520-5126

Protein-folding can go wrong and , with significant consequences for the living organism and the pharmaceutical industry, respectively. Here we propose a design principle for small-peptide-based protein-specific folding modifiers. The principle is based on constructing a “xenonucleus”, which is a prefolded peptide that mimics the folding nucleus of a protein. Using stopped-flow kinetics, NMR spectroscopy, Förster resonance energy transfer, single-molecule force measurements, and molecular dynamics simulations, we demonstrate that a xenonucleus can make the refolding of ubiquitin faster by 33 ± 5%, while variants of the same peptide have little or no effect. Our approach provides a novel method for constructing specific, genetically encodable folding catalysts for suitable proteins that have a well-defined contiguous folding nucleus.

Alternate Journal

J Am Chem Soc

PubMed ID

34724378

Authors

Anirban Das
Anju Yadav
Mona Gupta
Purushotham R
Vishram L Terse
Vicky Vishvakarma
Sameer Singh
Tathagata Nandi
Arkadeep Banerjee
Kalyaneswar Mandal
Shachi Gosavi
Ranabir Das
Sri Rama Koti Ainavarapu
Sudipta Maiti

Keywords

Models, Molecular
Protein Conformation
Ubiquitin
Protein Folding