Department of Biotechnology
inStem (Institute for Stem Cell Science and Regenerative Medicine)

Mechanistic insights into global suppressors of protein folding defects.

Publication Type

Journal Article

Date of Publication

August 1, 2022

Journal

PLoS genetics

Volume/Issue

18/8

ISSN

1553-7404

Most amino acid substitutions in a protein either lead to partial loss-of-function or are near neutral. Several studies have shown the existence of second-site mutations that can rescue defects caused by diverse loss-of-function mutations. Such global suppressor mutations are key drivers of protein evolution. However, the mechanisms responsible for such suppression remain poorly understood. To address this, we characterized multiple suppressor mutations both in isolation and in combination with inactive mutants. We examined six global suppressors of the bacterial toxin CcdB, the known M182T global suppressor of TEM-1 β-lactamase, the N239Y global suppressor of p53-DBD and three suppressors of the SARS-CoV-2 spike Receptor Binding Domain. When coupled to inactive mutants, they promote increased in-vivo solubilities as well as regain-of-function phenotypes. In the case of CcdB, where novel suppressors were isolated, we determined the crystal structures of three such suppressors to obtain insight into the specific molecular interactions responsible for the observed effects. While most individual suppressors result in small stability enhancements relative to wildtype, which can be combined to yield significant stability increments, thermodynamic stabilisation is neither necessary nor sufficient for suppressor action. Instead, in diverse systems, we observe that individual global suppressors greatly enhance the foldability of buried site mutants, primarily through increase in refolding rate parameters measured in vitro. In the crowded intracellular environment, mutations that slow down folding likely facilitate off-pathway aggregation. We suggest that suppressor mutations that accelerate refolding can counteract this, enhancing the yield of properly folded, functional protein in vivo.

Alternate Journal

PLoS Genet

PubMed ID

36037221

PubMed Central ID

PMC9491731

Authors

Gopinath Chattopadhyay
Jayantika Bhowmick
Kavyashree Manjunath
Shahbaz Ahmed
Parveen Goyal
Raghavan Varadarajan

Keywords

Humans
Mutation
SARS-CoV-2
COVID-19
Proteins
Protein Folding
Suppression, Genetic