Department of Biotechnology
inStem (Institute for Stem Cell Science and Regenerative Medicine)

Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India.

Publication Type

Journal Article

Date of Publication

November 19, 2021

Journal

Science (New York, N.Y.)

Volume/Issue

374/6570

ISSN

1095-9203

Delhi, the national capital of India, experienced multiple severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) outbreaks in 2020 and reached population seropositivity of >50% by 2021. During April 2021, the city became overwhelmed by COVID-19 cases and fatalities, as a new variant, B.1.617.2 (Delta), replaced B.1.1.7 (Alpha). A Bayesian model explains the growth advantage of Delta through a combination of increased transmissibility and reduced sensitivity to immune responses generated against earlier variants (median estimates: 1.5-fold greater transmissibility and 20% reduction in sensitivity). Seropositivity of an employee and family cohort increased from 42% to 87.5% between March and July 2021, with 27% reinfections, as judged by increased antibody concentration after a previous decline. The likely high transmissibility and partial evasion of immunity by the Delta variant contributed to an overwhelming surge in Delhi.

Alternate Journal

Science

PubMed ID

34648303

PubMed Central ID

PMC7612010

Authors

Mahesh S Dhar
Robin Marwal
Radhakrishnan Vs
Kalaiarasan Ponnusamy
Bani Jolly
Rahul C Bhoyar
Viren Sardana
Salwa Naushin
Mercy Rophina
Thomas A Mellan
Swapnil Mishra
Charles Whittaker
Saman Fatihi
Meena Datta
Priyanka Singh
Uma Sharma
Rajat Ujjainiya
Nitin Bhatheja
Mohit Kumar Divakar
Manoj K Singh
Mohamed Imran
Vigneshwar Senthivel
Ranjeet Maurya
Neha Jha
Priyanka Mehta
Vivekanand A
Pooja Sharma
Arvinden Vr
Urmila Chaudhary
Namita Soni
Lipi Thukral
Seth Flaxman
Samir Bhatt
Rajesh Pandey
Debasis Dash
Mohammed Faruq
Hemlata Lall
Hema Gogia
Preeti Madan
Sanket Kulkarni
Himanshu Chauhan
Shantanu Sengupta
Sandhya Kabra
Ravindra K Gupta
Sujeet K Singh
Anurag Agrawal
Partha Rakshit
Vinay Nandicoori
Karthik Bharadwaj Tallapaka
Divya Tej Sowpati
K Thangaraj
Murali Dharan Bashyam
Ashwin Dalal
Sridhar Sivasubbu
Vinod Scaria
Ajay Parida
Sunil K Raghav
Punit Prasad
Apurva Sarin
Satyajit Mayor
Uma Ramakrishnan
Dasaradhi Palakodeti
Aswin Sai Narain Seshasayee
Manoj Bhat
Yogesh Shouche
Ajay Pillai
Tanzin Dikid
Saumitra Das
Arindam Maitra
Sreedhar Chinnaswamy
Nidhan Kumar Biswas
Anita Sudhir Desai
Chitra Pattabiraman
M V Manjunatha
Reeta S Mani
Gautam Arunachal Udupi
Priya Abraham
Potdar Varsha Atul
Sarah S Cherian

Keywords

India
Child
Reinfection
Seroepidemiologic Studies
Adolescent
Genome, Viral
Immune Evasion
Humans
Molecular Epidemiology
Adult
Phylogeny
COVID-19
Young Adult