Department of Biotechnology
inStem (Institute for Stem Cell Science and Regenerative Medicine)

A 2-Tyr-1-carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase.

Publication Type

Journal Article

Date of Publication

September 21, 2020

Journal

Angewandte Chemie (International ed. in English)

Volume/Issue

59/39

ISSN

1521-3773

N,N-dimethyl formamide (DMF) is an extensively used organic solvent but is also a potent pollutant. Certain bacterial species from genera such as Paracoccus, Pseudomonas, and Alcaligenes have evolved to use DMF as a sole carbon and nitrogen source for growth via degradation by a dimethylformamidase (DMFase). We show that DMFase from Paracoccus sp. strain DMF is a halophilic and thermostable enzyme comprising a multimeric complex of the α β or (α β ) type. One of the three domains of the large subunit and the small subunit are hitherto undescribed protein folds of unknown evolutionary origin. The active site consists of a mononuclear iron coordinated by two Tyr side-chain phenolates and one carboxylate from Glu. The Fe ion in the active site catalyzes the hydrolytic cleavage of the amide bond in DMF. Kinetic characterization reveals that the enzyme shows cooperativity between subunits, and mutagenesis and structural data provide clues to the catalytic mechanism.

Alternate Journal

Angew Chem Int Ed Engl

PubMed ID

32452120

PubMed Central ID

PMC7686228

Authors

Chetan Kumar Arya
Swati Yadav
Jonathan Fine
Ana Casanal
Gaurav Chopra
Gurunath Ramanathan
Kutti R Vinothkumar
Ramaswamy Subramanian

Keywords

Molecular Structure
Tyrosine/chemistry
Dimethylformamide
Paracoccus
Amidohydrolases
Catalytic Domain
Amidohydrolases/chemistry
Amidohydrolases/metabolism
Dimethylformamide/chemistry
Tyrosine
Dimethylformamide/metabolism
Tyrosine/metabolism
Paracoccus/enzymology