inStem (Institute for Stem Cell Science and Regenerative Medicine)
See All Events 8th Hands on Workshop on “Integrated Omics” (Genomics, Proteomics and Bioinformatics)
Monday, 14 July 2025
Internal Event
8th Hands on workshop on “Integrated OMICS” (Genomics, Proteomics and Bioinformatics)
14th– 18th July, 2025
Workshop Scheduler
Day 1 (14/07/2025)
Timings | Type | Title | Venue | Speaker |
9.00 to 9.30 | Registration | Registration | Malgova | |
9.30 to 10.15 | Lecture | Integrated OMICs to understand mechanisms underlying development and stress responses in plants | Malgova | |
10.15 to 10.30 | Break | Tea break | Malgova | |
10.30 to 11.30 | Lecture | Contribution of Next Generation Genomics facility @ NCBS in developing cost effective sequencing method (s) | Malgova | |
11.30 to 12.30 | Lecture | Introduction to Proteomics technologies | Malgova | |
12.30 to 13.30 | Lunch | Canteen (Ist Floor) | | |
13.30 to 17.40 | Hands-on | Group I (Genomics): Sample QC and library preparation-RNA Seq | Narayanan, Vinay and Awadhesh | |
Group II (Proteomics) In-Solution and In-gel digestion Sample preparation | Swikruthi/Selsiya, Nirpendra and Ankit | |||
17.40 to 18.10 | Lecture | Identification and functional characterization of potential targets and biomarkers for Multiple Myeloma and Acute Myeloid Leukemia using proteomics and molecular approaches | Malgova (Online) | |
18.10 to 18.50 | Lecture | Solutions for Difficult NGS Samples and Fast Workflow | Malgova | |
18.50 to 19.30 | Lecture | Introduction to Bioinformatics | Malgova (Online) | Nitish (University of California) |
19.30 to 20.30 | Dinner | Canteen (Ist Floor) | | |
Day 2 (15/07/2025)
Timings | Type | Title | Venue | Speaker |
9.00 to 11.00 | Hands-on | Installing software’s for Bioinformatics | InStem North wing First Floor (Online) | Nitish (University of California) and Anurag (MGH, Harvard Medical School) |
11.00 to 11.30 | Break | Tea break | InStem North wing | |
11.30 to 13.30 | Hands-on | Group I (Genomics): Library Preparation continue, Library QC-RNA Seq | Narayanan, Vinay and Awadhesh | |
Group II (Proteomics) Desalting and MS data acquisition IDA and DDA | Swikruthi/Selsiya, Nirpendra and Ankit | |||
13.30 to 14.30 | Lunch | Canteen (Ist Floor) | | |
14.30 to 19.00 | Hands-on | Group I (Genomics): Sequencing run setup and data-demultiplexing | Narayanan, Vinay and Awadhesh | |
Group II (Proteomics) Desalting and MS data acquisition IDA and DDA | Swikruthi/Selsiya, Nirpendra and Ankit | |||
19.00 to 20.00 | Dinner | Canteen (Ist Floor) | | |
Day 3 (16/07/2025)
Timings | Type | Title | Venue | Speaker |
9.00 to 11.00 | Hands-on | Hands on RNA Seq data analysis: FASTQC to raw read count generation | InStem North wing (Online) | Nitish (University of California) and Anurag (MGH, Harvard Medical School) |
11.00 to 11.30 | Break | Tea break | InStem North wing | |
11.30 to 12.30 | Lecture | Label free Quantitative Proteomics | InStem North wing | |
12.30 to 13.30 | Lunch | Canteen (Ist Floor) | | |
13.30 to 18.15 | Hands-on | Group II (Genomics): Sample QC and library preparation-RNA Seq | Narayanan, Vinay and Awadhesh | |
Group I (Proteomics) In-Solution and In-gel digestion Sample preparation | Selsiya/Swikruthi, Nirpendra and Ankit | |||
18.15 to 19.00 | Lecture | Unveiling Role of lncRNAs and Identifying Novel Antiviral Drug Targets: A Bioinformatics-Driven Discovery Approach | InStem North wing (Online) |
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19.00 to 19.30 | Lecture | Advancements and Applications of Cross-linking Mass Spectrometry in Large-scale Proteomics | InStem North wing (Online) | Yugandhar (Cornell) |
19.30 to 20.30 | Dinner | Canteen (Ist Floor) | | |
Day 4 (17/07/2025)
Timings | Type | Title | Venue | Speaker |
9.00 to 11.00 | Hands-on | Hands on RNA Seq data analysis: Raw read to Differential Gene Expression | InStem North wing (Online) | Nitish (University of California) and Anurag (MGH, Harvard Medical School) |
11.00 to 11.30 | Break | Tea break | InStem North wing | |
11.30 to 13.30 | Hands-on | Group II (Genomics): Library Preparation continue, Library QC-RNA Seq | Narayanan, Vinay and Awadhesh | |
Group I (Proteomics) Desalting and MS data acquisition IDA and DDA | Selsiya/Swikruthi, Nirpendra and Ankit | |||
13.30 to 14.30 | Lunch | Lunch canteen (Ist Floor) | | |
14.30 to 18.00 | Hands-on | Group II (Genomics): Sequencing run setup and data-demultiplexing | Narayanan, Vinay and Awadhesh | |
Group I (Proteomics) Desalting and MS data acquisition IDA and DDA | Swikruthi/Selsiya, Nirpendra and Ankit | |||
18.00 to 19.00 | Lecture | Data representation for Proteomics | InStem North wing | Ankit (NCBS) |
19.00 to 20.00 | Dinner | Canteen (Ist Floor) | | |
Day 5 (18/07/2025)
Timings | Type | Title | Venue | Speaker |
9.00 to 11.00 | Hands-on | Functional enrichment and integrating omics to answer the biological question | InStem North wing (Online) | Nitish (University of California) and Anurag (MGH, Harvard Medical School) |
11.00 to 11.30 | Break | Tea break | InStem North wing | |
11.30 to 12.15 | Lecture | Spatial Biology at High Resolution with 10x Genomics | InStem North wing | |
12.15 to 13.00 | Lecture | Spatial Transcriptomics in Action: Uncovering Cellular Context Within Tissue Architecture | InStem North wing | |
13.00 to 14.00 | Lunch | Canteen (Ist Floor) | | |
14.00 to 15.15 | Demo | Group I (Genomics): Single Cell RNA Sequencing | Narayanan, Vinay and Awadhesh | |
Group II (Proteomics): Imaging-based Spatial “Omics” | Swikruthi & Ankit | |||
15.15 to 16.30 | Demo | Group II (Genomics): Single Cell RNA Sequencing | Narayanan, Vinay and Awadhesh | |
Group I (Proteomics): Imaging-based Spatial “Omics” | Selsiya & Ankit | |||
16.30 to 17.30 | | Facility Tour (MGEF & EM Facility) | ||
17.30 to 18.00 | | Participants test/ feedback | InStem North wing | |
18.00 to 18.30 | | Closing remarks and Certification Best Participant Prize | | |
19.00 to 19.30 | Dinner | Canteen (Ist Floor) | ||
Registration Link: https://forms.gle/weNB9ztEpAhLZXeT6(link is external)
Venue: National Centre For Biological Sciences (NCBS) and Institute of Stem Cell Science and Regenerative medicine (InStem)
GKVK, Bellary Main Road, Bengaluru- 560065
Dates: July 14-18th, 2025
Application Deadline: June 08, 2025
