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Journal Article
Hiwale AA, Voshavar C, Dharmalingam P, Dhayani A, Mukthavaram R, Nadella R, Sunnapu O, Gandhi S, Naidu V.GM, Chaudhuri A, Marepally S, Vemula PKumar.  2017.  Scaling the effect of hydrophobic chain length on gene transfer properties of di-alkyl{,} di-hydroxy ethylammonium chloride based cationic amphiphiles. RSC Adv.. 7:25398-25405. DOI:10.1039/C7RA02271A.
Rostovtseva TK, Gurnev PA, Hoogerheide DP, Rovini A, Sirajuddin M, Bezrukov SM.  2018.  Sequence diversity of tubulin isotypes in regulation of the mitochondrial voltage-dependent anion channel.. J Biol Chem. DOI:10.1074/jbc.RA117.001569.
Ghate V, Renjith A, Badnikar K, Pahal S, Jayadevi SN, Nayak MM, Vemula PK, Subramanyam DN.  2022.  Single step fabrication of hollow microneedles and an experimental package for controlled drug delivery.. Int J Pharm. 632:122546. DOI:10.1016/j.ijpharm.2022.122546.
Badarinath K, Dam B, Kataria S, Zirmire RK, Dey R, Kansagara G, Ajnabi J, Hegde A, Singh R, Masudi T, Sambath J, Sachithanandan SP, Kumar P, Gulyani A, He Y-W, Krishna S, Jamora C.  2022.  Snail maintains the stem/progenitor state of skin epithelial cells and carcinomas through the autocrine effect of matricellular protein Mindin.. Cell Rep. 40(12):111390. DOI:10.1016/j.celrep.2022.111390.
Lee P, Gund R, Dutta A, Pincha N, Rana I, Ghosh S, Witherden D, Kandyba E, MacLeod A, Kobielak K, Havran WL, Jamora C.  2017.  Stimulation of hair follicle stem cell proliferation through an IL-1 dependent activation of γδT-cells.. Elife. 6 DOI:10.7554/eLife.28875.
Lee P, Gund R, Dutta A, Pincha N, Rana I, Ghosh S, Witherden D, Kandyba E, MacLeod A, Kobielak K, Havran WL, Jamora C.  2017.  Stimulation of hair follicle stem cell proliferation through an IL-1 dependent activation of γδT-cells.. Elife. 6 DOI:10.7554/eLife.28875.
Adelman JL, Ghezzi C, Bisignano P, Loo DDF, Choe S, Abramson J, Rosenberg JM, Wright EM, Grabe M.  2016.  Stochastic steps in secondary active sugar transport.. Proc Natl Acad Sci U S A. 113(27):E3960-6. DOI:10.1073/pnas.1525378113.
Adelman JL, Ghezzi C, Bisignano P, Loo DDF, Choe S, Abramson J, Rosenberg JM, Wright EM, Grabe M.  2016.  Stochastic steps in secondary active sugar transport.. Proc Natl Acad Sci U S A. 113(27):E3960-6. DOI:10.1073/pnas.1525378113.
Hariharan N, Ghosh S, Palakodeti D.  2022.  The story of rRNA expansion segments: Finding functionality amidst diversity.. Wiley Interdiscip Rev RNA. :e1732. DOI:10.1002/wrna.1732.
Prabhakara C, Godbole R, Sil P, Jahnavi S, Gulzar S-E-J, van Zanten TS, Sheth D, Subhash N, Chandra A, Shivaraj A, Panikulam P, U I, Nuthakki VKumar, Puthiyapurayil TParassini, Ahmed R, Najar AHussain, Lingamallu SManoz, Das S, Mahajan B, Vemula P et al..  2021.  Strategies to target SARS-CoV-2 entry and infection using dual mechanisms of inhibition by acidification inhibitors.. PLoS Pathog. 17(7):e1009706. DOI:10.1371/journal.ppat.1009706.
Prabhakara C, Godbole R, Sil P, Jahnavi S, Gulzar S-E-J, van Zanten TS, Sheth D, Subhash N, Chandra A, Shivaraj A, Panikulam P, U I, Nuthakki VKumar, Puthiyapurayil TParassini, Ahmed R, Najar AHussain, Lingamallu SManoz, Das S, Mahajan B, Vemula P et al..  2021.  Strategies to target SARS-CoV-2 entry and infection using dual mechanisms of inhibition by acidification inhibitors.. PLoS Pathog. 17(7):e1009706. DOI:10.1371/journal.ppat.1009706.
Prabhakara C, Godbole R, Sil P, Jahnavi S, Gulzar S-E-J, van Zanten TS, Sheth D, Subhash N, Chandra A, Shivaraj A, Panikulam P, U I, Nuthakki VKumar, Puthiyapurayil TParassini, Ahmed R, Najar AHussain, Lingamallu SManoz, Das S, Mahajan B, Vemula P et al..  2021.  Strategies to target SARS-CoV-2 entry and infection using dual mechanisms of inhibition by acidification inhibitors.. PLoS Pathog. 17(7):e1009706. DOI:10.1371/journal.ppat.1009706.
Ganesan S, Palani HKumar, Lakshmanan V, Balasundaram N, Alex AAbu, David S, Venkatraman A, Korula A, George B, Balasubramanian P, Palakodeti D, Vyas N, Mathews V.  2019.  Stromal cells downregulate miR-23a-5p to activate protective autophagy in acute myeloid leukemia.. Cell Death Dis. 10(10):736. DOI:10.1038/s41419-019-1964-8.
Ganesan S, Palani HKumar, Lakshmanan V, Balasundaram N, Alex AAbu, David S, Venkatraman A, Korula A, George B, Balasubramanian P, Palakodeti D, Vyas N, Mathews V.  2019.  Stromal cells downregulate miR-23a-5p to activate protective autophagy in acute myeloid leukemia.. Cell Death Dis. 10(10):736. DOI:10.1038/s41419-019-1964-8.
Mathivanan S, Lakshman PKumar Chun, Singh M, Giridharan S, Sathish K, Hurakadli MA, Bharatham K, Kamariah N.  2022.  Structure of a 14-3-3ε:FOXO3a Phosphopeptide Complex Reveals 14-3-3 Isoform-Specific Binding of Forkhead Box Class O Transcription Factor (FOXO) Phosphoproteins.. ACS Omega. 7(28):24344-24352. DOI:10.1021/acsomega.2c01700.
Banerjee S, Coussens NP, Gallat F-X, Sathyanarayanan N, Srikanth J, Yagi KJ, Gray JSS, Tobe SS, Stay B, Chavas LMG, Ramaswamy S.  2016.  Structure of a heterogeneous, glycosylated, lipid-bound, ıt in vivo-grown protein crystal at atomic resolution from the viviparous cockroach ıt Diploptera punctata. IUCrJ. 3:282–293. DOI:10.1107/S2052252516008903.
Banerjee S, Coussens NP, Gallat F-X, Sathyanarayanan N, Srikanth J, Yagi KJ, Gray JSS, Tobe SS, Stay B, Chavas LMG, Ramaswamy S.  2016.  Structure of a heterogeneous, glycosylated, lipid-bound, ıt in vivo-grown protein crystal at atomic resolution from the viviparous cockroach ıt Diploptera punctata. IUCrJ. 3:282–293. DOI:10.1107/S2052252516008903.
Kurdekar V, Giridharan S, Subbarao J, Nijaguna MB, Periasamy J, Boggaram S, Shivange AV, Sadasivam G, Padigaru M, Potluri V, Venkitaraman AR, Bharatham K.  2019.  Structure-Guided Synthesis and Evaluation of Small-Molecule Inhibitors Targeting Protein-Protein Interactions of BRCA1 tBRCT Domain.. ChemMedChem. 14(18):1620-1632. DOI:10.1002/cmdc.201900300.
Wahlgren WY, Dunevall E, North RA, Paz, iv A, Scalise M, Bisignano P, Bengtsson-Palme J, Goyal P, Claesson E, Caing-Carlsson R, Andersson R, Beis K, Nilsson UJ, Farewell A, Pochini L, Indiveri C, Grabe M, Dobson RCJ, Abramson J, Ramaswamy S et al..  2018.  Substrate-bound outward-open structure of a Na-coupled sialic acid symporter reveals a new Na site.. Nat Commun. 9(1):1753. DOI:10.1038/s41467-018-04045-7.
Wahlgren WY, Dunevall E, North RA, Paz, iv A, Scalise M, Bisignano P, Bengtsson-Palme J, Goyal P, Claesson E, Caing-Carlsson R, Andersson R, Beis K, Nilsson UJ, Farewell A, Pochini L, Indiveri C, Grabe M, Dobson RCJ, Abramson J, Ramaswamy S et al..  2018.  Substrate-bound outward-open structure of a Na-coupled sialic acid symporter reveals a new Na site.. Nat Commun. 9(1):1753. DOI:10.1038/s41467-018-04045-7.
Emery A, Hardwick BS, Crooks AT, Milech N, Watt PM, Mithra C, Kumar V, Giridharan S, Sadasivam G, Mathivanan S, Sudhakar S, Bairy S, Bharatham K, Hurakadli MA, Prasad TK, Kamariah N, Muellner M, Coelho M, Torrance CJ, McKenzie GJ et al..  2021.  Target identification for small-molecule discovery in the FOXO3a tumor-suppressor pathway using a biodiverse peptide library.. Cell Chem Biol. DOI:10.1016/j.chembiol.2021.05.009.
Kumar V, Lakshman PKumar Chun, Prasad TKootteri, Manjunath K, Bairy S, Vasu AS, Ganavi B, Jasti S, Kamariah N.  2024.  Target-based drug discovery: Applications of fluorescence techniques in high throughput and fragment-based screening.. Heliyon. 10(1):e23864. DOI:10.1016/j.heliyon.2023.e23864.
Periasamy J, Kurdekar V, Jasti S, Nijaguna MB, Boggaram S, Hurakadli MA, Raina D, Kurup LMeenakshi, Chintha C, Manjunath K, Goyal A, Sadasivam G, Bharatham K, Padigaru M, Potluri V, Venkitaraman AR.  2018.  Targeting Phosphopeptide Recognition by the Human BRCA1 Tandem BRCT Domain to Interrupt BRCA1-Dependent Signaling.. Cell Chem Biol. 25(6):677-690.e12. DOI:10.1016/j.chembiol.2018.02.012.
Cattenoz PB, Sakr R, Pavlidaki A, Delaporte C, Riba A, Molina N, Hariharan N, Mukherjee T, Giangrande A.  2020.  Temporal specificity and heterogeneity of Drosophila immune cells.. EMBO J. :e104486. DOI:10.15252/embj.2020104486.
Cattenoz PB, Sakr R, Pavlidaki A, Delaporte C, Riba A, Molina N, Hariharan N, Mukherjee T, Giangrande A.  2020.  Temporal specificity and heterogeneity of the fly immune cells’ transcriptional landscape. The EMBO Journal (in press).
Dubey S, Jaiswal B, Gupta A.  2022.  TIP60 acts as a regulator of genes involved in filopodia formation and cell migration during wound healing.. J Biol Chem. 298(7):102015. DOI:10.1016/j.jbc.2022.102015.
Joshi N, Yan J, Levy S, Bhagchandani S, Slaughter KV, Sherman NE, Amirault J, Wang Y, Riegel L, He X, Rui TShi, Valic M, Vemula PK, Miranda OR, Levy O, Gravallese EM, Aliprantis AO, Ermann J, Karp JM.  2018.  Towards an arthritis flare-responsive drug delivery system.. Nat Commun. 9(1):1275. DOI:10.1038/s41467-018-03691-1.
Gala HP, Saha D, Venugopal N, Aloysius A, Purohit G, Dhawan J.  2022.  A transcriptionally repressed quiescence program is associated with paused RNA polymerase II and is poised for cell cycle re-entry.. J Cell Sci. 135(15) DOI:10.1242/jcs.259789.
Corsi GI, Gadekar VP, Haukedal H, Doncheva NT, Anthon C, Ambardar S, Palakodeti D, Hyttel P, Freude K, Seemann SE, Gorodkin J.  2023.  The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression.. Neurobiol Dis. 178:105980. DOI:10.1016/j.nbd.2022.105980.
Corsi GI, Gadekar VP, Haukedal H, Doncheva NT, Anthon C, Ambardar S, Palakodeti D, Hyttel P, Freude K, Seemann SE, Gorodkin J.  2023.  The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression.. Neurobiol Dis. 178:105980. DOI:10.1016/j.nbd.2022.105980.

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